Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015558: Streptococcus parauberis KCTC 11537 chromosome, complete genome

NCBI: NC_015558

Host Lineage: Streptococcus parauberis; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Fish pathogen. Streptococcus parauberis is one of the species implicated in warm water streptococcosis in aquaculture fish. This organism causes a systemic disease with high mortality and significant economic impact. Isolated from the spleen of diseased olive flounder collected from an aquaculture farm in Jeju Island, South Korea, in 2006.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1905227*93037825152Island text1.631719.545632.8917Neighbours21BLASTN+IslandViewer 905227.gbk
21389369142083031462Island text2.1123420.467437.0143Neighbours21BLASTN+IslandViewer 1389369.gbk
31425271145459929329Island text2.0928719.978837.7787Neighbours21BLASTN+IslandViewer 1425271.gbk
41485762*150995724196Island text1.7405120.564134.0981Neighbours21BLASTN+1485762.gbk
51813500183109917600Island text1.5249818.299828.0735Neighbours21BLASTN+1813500.gbk