Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015557: Hydrogenobaculum sp. 3684 chromosome, complete genome

NCBI: NC_015557

Host Lineage: Hydrogenobaculum; Hydrogenobaculum; Aquificaceae; Aquificales; Aquificae; Bacteria

General Information: Isolation source: Dragon spring, acid-sulfate-chloride geothermal spring, from yellow elemental sulfur (SO) deposition zone and brown, Fe-oxyhydroxide zone. Geographic location: USA: Yellowstone National Park.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1306225028319662Island text1.6282518.591932.0578Neighbours21BLASTN30622.gbk
290503*10948318981Island text1.6552415.992827.1044Neighbours21BLASTN90503.gbk
3114648*15148336836Island text1.6455716.81734.5084Neighbours21BLASTN+114648.gbk
4215397*25864043244Island text1.878619.13935.9118Neighbours21BLASTN+215397.gbk
5278000*30099923000Island text1.6113116.324230.2777Neighbours21BLASTN+278000.gbk
6558127*57785119725Island text1.7066316.53731.0635Neighbours21BLASTN558127.gbk
7583475*60736423890Island text1.9616217.072125.2044Neighbours21BLASTN+583475.gbk
8765500*79483429335Island text2.5159727.270836.4722Neighbours21BLASTN765500.gbk
9905145*92735322209Island text1.8660617.494534.9543Neighbours21BLASTN+905145.gbk
10981698*100556023863Island text1.5625219.120934.584Neighbours21BLASTN981698.gbk
111232772*125805825287Island text2.2853927.101933.2135Neighbours323BLASTN+1232772.gbk
121333158*135835525198Island text1.5602216.533927.281Neighbours21BLASTN+1333158.gbk
131412917*143685823942Island text1.6225916.941334.3952Neighbours21BLASTN1412917.gbk