Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015556: Pseudomonas fulva 12-X chromosome, complete genome

NCBI: NC_015556

Host Lineage: Pseudomonas fulva; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Country: Japan; Environment: Host, Soil; Isolation: rice paddy. This species was isolated from a rice paddy.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
113043716194631510Island text3.0560734.06742.7786Neighbours11BLASTN+IslandViewer 130437.gbk
251564153855622916Island text1.4852825.741745.0055Neighbours11BLASTN+515641.gbk
3717993*74011322121Island text1.4139523.060633.8592Neighbours11BLASTN717993.gbk
4819503*84290123399Island text1.3743219.242533.6399Neighbours11BLASTN+819503.gbk
51188500122602637527Island text1.7958823.783123.2461Neighbours11BLASTN+1188500.gbk
61899850192183821989Island text1.6251923.630744.3287Neighbours11BLASTN+1899850.gbk
72265940*233644770508Island text1.9111422.163630.163Neighbours11BLASTN+IslandViewer 2265940.gbk
84025559404512519567Island text1.5709920.721924.4934Neighbours11BLASTN+4025559.gbk
94074367*410534530979Island text1.934924.783934.2774Neighbours11BLASTNIslandViewer 4074367.gbk
104118304414271224409Island text2.1641425.068642.1179Neighbours11BLASTN+IslandViewer 4118304.gbk
114543380456955726178Island text2.9060228.158244.1934Neighbours11BLASTNIslandViewer 4543380.gbk