Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015555: Thermoanaerobacterium xylanolyticum LX-11 chromosome, complete

NCBI: NC_015555

Host Lineage: Thermoanaerobacterium xylanolyticum; Thermoanaerobacterium; Thermoanaerobacterales Family III; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Country: USA; Environment: Fresh water, Sediment; Isolation: Frying Pan Springs (thermal spring); Temp: Thermophile. This is a thermophilic, anaerobic, xylan-degrading bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
144782276918292Island text2.2455822.545837.9157Neighbours21BLASTN4478.gbk
249842*9077940938Island text3.8518428.737151.512Neighbours21BLASTN+49842.gbk
311497713356118585Island text1.857222.18235.79Neighbours21BLASTN114977.gbk
421193523209920165Island text2.1588822.353337.9888Neighbours21BLASTN+211935.gbk
5277364*29637119008Island text1.6259721.768633.8165Neighbours21BLASTN277364.gbk
6327562*38328255721Island text3.6243224.473946.026Neighbours21BLASTN+327562.gbk
738600040434618347Island text2.6289723.006639.7165Neighbours21BLASTN+386000.gbk
8430054*45937829325Island text3.6482728.959654.2412Neighbours21BLASTN+430054.gbk
9693461*71644522985Island text2.3420722.297541.4606Neighbours21BLASTN+693461.gbk
10863173*88705323881Island text2.170422.124341.1682Neighbours21BLASTN+863173.gbk
111450704*146842117718Island text2.8533626.544645.6492Neighbours21BLASTN+1450704.gbk
121792242181157719336Island text2.0018622.039235.3819Neighbours21BLASTN+1792242.gbk
131989463*201087221410Island text1.830823.690638.9607Neighbours21BLASTN+1989463.gbk
142259500*230459945100Island text1.7869224.996235.0231Neighbours21BLASTN+2259500.gbk
152359000238450825509Island text1.576720.898329.1692Neighbours21BLASTN+2359000.gbk