Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015554: Alteromonas sp. SN2 chromosome, complete genome

NCBI: NC_015554

Host Lineage: Alteromonas; Alteromonas; Alteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolate was obtained from crude oil contaminated sea site and has a capacity to degrade PAH's compounds present in crude oil. It can be used for bioremediation.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
181750085163434135Island text2.2917728.687321.7501Neighbours21BLASTN817500.gbk
21215401123622120821Island text1.6223228.442927.8449Neighbours21BLASTN+IslandViewer 1215401.gbk
31653614167632322710Island text1.8218525.495523.1636Neighbours21BLASTNIslandViewer 1653614.gbk
42355379237351818140Island text1.9191226.957716.5976Neighbours21BLASTN+IslandViewer 2355379.gbk
52505437*252927323837Island text2.1396425.808619.5517Neighbours21BLASTN+2505437.gbk
63696970*372068223713Island text1.4727727.535336.5148Neighbours21BLASTN+IslandViewer 3696970.gbk
73808529382707318545Island text1.6795127.304217.359Neighbours21BLASTN+IslandViewer 3808529.gbk
83964000398956825569Island text1.7463640.73941.2093Neighbours42BLASTN+3964000.gbk
94002952402133118380Island text1.4290327.748128.0546Neighbours21+IslandViewer 4002952.gbk
104266530428983723308Island text1.7121228.992928.4627Neighbours21BLASTN+IslandViewer 4266530.gbk
114648919*467413225214Island text1.3934228.05216.5367Neighbours21BLASTN+IslandViewer 4648919.gbk
124724245*475372329479Island text1.9741342.032931.6218Neighbours42BLASTN+IslandViewer 4724245.gbk
134824000484824924250Island text1.4322227.565727.0191Neighbours21BLASTN+IslandViewer 4824000.gbk