Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015520: Mahella australiensis 50-1 BON chromosome, complete genome

NCBI: NC_015520

Host Lineage: Mahella australiensis; Mahella; Thermoanaerobacterales Family IV; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Country: Australia; Environment: Oil fields; Isolation: Riverslea oil field in the Bowen-Surat; Temp: Thermophile; Temp: 50C. Mahella australiensis is a spore-forming thermophile and was originally isolated from an Australian oil reservoir.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
155710*7865322944Island text1.5480133.568751.0483Neighbours337BLASTN+55710.gbk
2224136*26409939964Island text1.6174937.988841.3454Neighbours337BLASTN+224136.gbk
3330500*35081720318Island text1.7479637.389343.4962Neighbours337BLASTN+330500.gbk
4595532*61934623815Island text1.9431331.465853.8799Neighbours337+IslandViewer 595532.gbk
51619000163756818569Island text1.4879536.788730.0158Neighbours337BLASTN+1619000.gbk
61683616171279829183Island text2.2068442.366438.9049Neighbours337+IslandViewer 1683616.gbk
72280643*230563624994Island text1.8781633.069151.2576Neighbours337BLASTN2280643.gbk
82567329259006722739Island text1.6722333.358745.7157Neighbours337BLASTNIslandViewer 2567329.gbk
92612767263568322917Island text1.5786835.481543.819Neighbours337BLASTN+IslandViewer 2612767.gbk
102821406285691535510Island text1.4836932.986147.412Neighbours337BLASTN+2821406.gbk
112859820288279322974Island text1.4768537.183942.5813Neighbours337+2859820.gbk
122974048300459930552Island text1.5285233.302445.7005Neighbours37BLASTN+IslandViewer 2974048.gbk
133038770305870319934Island text1.5737336.227339.743Neighbours337BLASTN3038770.gbk
143060495308389923405Island text1.62934.239150.9831Neighbours337BLASTN+IslandViewer 3060495.gbk