Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015519: Tepidanaerobacter sp. Re1 chromosome, complete genome

NCBI: NC_015519

Host Lineage: Tepidanaerobacter acetatoxydans; Tepidanaerobacter; Thermoanaerobacteraceae; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Country: Sweden; Environment: Sludge; Temp: Mesophile; Temp: 20-55C; Isolation: ammonium-rich, mesophilic methanogenic.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1197836*23759939764Island text2.2208327.520645.2881Neighbours21BLASTN+197836.gbk
2245036*26174516710Island text2.0005728.352244.9797Neighbours21BLASTN245036.gbk
3270637*29414823512Island text1.6545724.270439.877Neighbours21BLASTN+270637.gbk
4426948*46917942232Island text1.955326.884342.6743Neighbours21BLASTN+426948.gbk
5488550*51290724358Island text1.5928226.106539.6438Neighbours21BLASTN+488550.gbk
658600060725221253Island text1.6614924.11542.9782Neighbours21BLASTN+586000.gbk
7686027*70564819622Island text1.656723.346342.6666Neighbours21BLASTN+686027.gbk
880192982751025582Island text2.3295728.214148.9135Neighbours21BLASTN+801929.gbk
9924000*94202318024Island text1.5078622.613734.0419Neighbours21BLASTN924000.gbk
101081539*110572524187Island text2.9189425.223545.4904Neighbours21BLASTN+IslandViewer 1081539.gbk
111113095*113787824784Island text1.518524.54444.5608Neighbours21BLASTN1113095.gbk
121205049*122836723319Island text2.9113837.287254.0169Neighbours21BLASTN1205049.gbk
131888917191290423988Island text2.229626.092245.1371Neighbours21BLASTN+1888917.gbk
142045935*206875622822Island text1.5695222.79334.0906Neighbours21BLASTN2045935.gbk
152413323243159918277Island text2.6325623.224736.9533Neighbours21BLASTN2413323.gbk
162489728252019830471Island text2.3204123.211836.2468Neighbours21BLASTN+IslandViewer 2489728.gbk
172526047*256306637020Island text1.9818926.434240.2261Neighbours21BLASTN+2526047.gbk
182580310260227821969Island text1.6685229.520341.5558Neighbours21BLASTN+2580310.gbk
192605709262542119713Island text1.7210923.507439.2801Neighbours21BLASTN2605709.gbk
202739347*276599926653Island text1.6471223.255127.5673Neighbours21BLASTN+2739347.gbk