Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015518: Acidianus hospitalis W1 chromosome, complete genome

NCBI: NC_015518

Host Lineage: Acidianus hospitalis; Acidianus; Sulfolobaceae; Sulfolobales; Crenarchaeota; Archaea

General Information: Chemolithoautotrophic and facultatively anaerobic acidothermophile. The Acidianus genus consists of acidothermophiles which grow optimally and slowly in the temperature range 65–95 degrees C and at pH 2–4 and belongs to the order Sulfolobales.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1179938*19951119574Island text1.6140916.380426.2111Neighbours21BLASTN+179938.gbk
222200024446722468Island text1.4800618.82330.5762Neighbours21BLASTN+222000.gbk
3585816*60881222997Island text2.0379615.886433.2196Neighbours21BLASTN585816.gbk
4614806*63471119906Island text1.8089715.876325.7461Neighbours21BLASTN+614806.gbk
5685885*71159925715Island text2.1267617.93433.2028Neighbours21BLASTN685885.gbk
6761380*82593864559Island text2.3870717.224733.2274Neighbours21BLASTN+761380.gbk
7997707*102085223146Island text2.3276217.036232.3182Neighbours21BLASTN997707.gbk
81052701*107851725817Island text2.0088518.383532.6754Neighbours21BLASTN+1052701.gbk
91095879*113629940421Island text1.5837816.899630.7092Neighbours21BLASTN+1095879.gbk
101160430*118359923170Island text2.7184818.539534.1927NeighboursBLASTN1160430.gbk
111518047154025822212Island text1.6584418.530529.7986Neighbours21BLASTN1518047.gbk
121569936159247922544Island text1.8363214.691829.0657Neighbours21BLASTN+1569936.gbk
131638262165750619245Island text1.5102616.932115.7449Neighbours21BLASTN+IslandViewer 1638262.gbk