Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015514: Cellulomonas fimi ATCC 484 chromosome, complete genome

NCBI: NC_015514

Host Lineage: Cellulomonas fimi; Cellulomonas; Cellulomonadaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Environment: Soil; Isolation: Soil; Temp: Mesophile; Temp: 30C. Cellulomonas fimi was isolated from soil and is able to hydrolyze cellulose, xylans, chitin, and starch.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
133972*6268928718Island text2.3985816.345312.2415Neighbours11BLASTNIslandViewer 33972.gbk
218177320534923577Island text1.7563514.50158.43586Neighbours11BLASTN+IslandViewer 181773.gbk
347793550079522861Island text1.6152512.64868.67297Neighbours11BLASTN+IslandViewer 477935.gbk
41088767*111461425848Island text1.4982119.35821.2998Neighbours8BLASTN1088767.gbk
51923428194601322586Island text1.6550315.316111.2596Neighbours8BLASTN+1923428.gbk
62414617243874024124Island text1.4627414.77996.61469Neighbours8BLASTN2414617.gbk
73307199334464737449Island text1.7859114.764111.7273Neighbours11BLASTN+IslandViewer 3307199.gbk
83351052*338153030479Island text1.6887413.349210.0568Neighbours11BLASTNIslandViewer 3351052.gbk
93508022*353507127050Island text2.1050114.290910.0852Neighbours11BLASTN+IslandViewer 3508022.gbk
103877810*390211124302Island text1.7194913.3098.62337Neighbours11BLASTN+IslandViewer 3877810.gbk
113911655393796226308Island text1.7238316.763713.8239Neighbours8BLASTN+3911655.gbk