Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015510: Haliscomenobacter hydrossis DSM 1100 chromosome, complete genome

NCBI: NC_015510

Host Lineage: Haliscomenobacter hydrossis; Haliscomenobacter; Saprospiraceae; Sphingobacteriales; Bacteroidetes; Bacteria

General Information: Country: Netherlands; Environment: Sludge; Isolation: sludge (activated sludge, Oss); Temp: Mesophile. This is a sheathed bacterium isolated from activated sludge.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
164450067559931100Island text1.7342834.361127.9523Neighbours21BLASTN+IslandViewer 644500.gbk
283406485565021587Island text1.6283131.180125.737Neighbours319BLASTN+834064.gbk
31012195103621224018Island text1.6713533.231422.7951Neighbours24BLASTN+IslandViewer 1012195.gbk
41096755111995023196Island text1.7510231.119923.2525Neighbours319BLASTNIslandViewer 1096755.gbk
51234500*125861024111Island text1.9591634.150918.3422Neighbours319BLASTN+IslandViewer 1234500.gbk
61709226172749618271Island text1.5288829.614520.7882Neighbours319BLASTN1709226.gbk
71978539*200221623678Island text1.8666630.173415.3191Neighbours319BLASTN+IslandViewer 1978539.gbk
82119336214413224797Island text1.608229.866619.7976Neighbours319+2119336.gbk
92209663223284123179Island text1.4728829.395714.746Neighbours24BLASTN+IslandViewer 2209663.gbk
102398434242275524322Island text1.6492730.858220.3097Neighbours319BLASTN+2398434.gbk
112487617*251015422538Island text1.6356734.864446.9766Neighbours319BLASTN2487617.gbk
122907815*293770429890Island text2.0212434.577720.7078Neighbours21BLASTN+IslandViewer 2907815.gbk
133273308*330199028683Island text1.9880532.73522.2031Neighbours21BLASTN+IslandViewer 3273308.gbk
143375205340577030566Island text1.8654133.658126.2789Neighbours319BLASTNIslandViewer 3375205.gbk
153543352*357354230191Island text1.6536329.969523.7666Neighbours21BLASTN3543352.gbk
163641676366786126186Island text1.5162829.038824.3053Neighbours21BLASTN+IslandViewer 3641676.gbk
173834282*385510620825Island text1.5213333.31148.9341Neighbours319BLASTN3834282.gbk
184065753408865322901Island text1.6211332.698617.9531Neighbours319+IslandViewer 4065753.gbk
194113505413651923015Island text1.5900928.975617.2798Neighbours319BLASTNIslandViewer 4113505.gbk
204251553427218120629Island text1.4970430.480924.394Neighbours319BLASTN4251553.gbk
214674774*469998025207Island text1.8488333.218214.7427Neighbours319BLASTNIslandViewer 4674774.gbk
224905345492856823224Island text1.4986230.502222.987Neighbours319BLASTN4905345.gbk
234982255*500865426400Island text2.2145534.522321.8609Neighbours319BLASTN+IslandViewer 4982255.gbk
245539153555861519463Island text1.5631828.757319.1254Neighbours319BLASTNIslandViewer 5539153.gbk
256226482625009923618Island text1.5183827.845325.5147Neighbours319BLASTN6226482.gbk
266373937*640259928663Island text1.9736234.604318.056Neighbours319BLASTNIslandViewer 6373937.gbk
276653159669478441626Island text1.5489629.276921.0639Neighbours24BLASTN6653159.gbk
286842692*686497222281Island text1.6029427.204921.2511Neighbours319BLASTNIslandViewer 6842692.gbk
298069440809259823159Island text1.4576829.924624.2173Neighbours319BLASTN8069440.gbk
308221378824065419277Island text1.5043227.371112.87Neighbours319BLASTN8221378.gbk