Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015508: Agrobacterium sp. H13-3 chromosome linear, complete sequence

NCBI: NC_015508

Host Lineage: Agrobacterium; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain was sequenced to substantiate a possible relationship with A. tumefaciens C58 and to analyse the genetic background of motility and chemotaxis. A soil bacterium isolated from the rhizophere of Lupinus luteus. non-virulent species.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
125135427642025067Island text1.5605230.034930.7177Neighbours11BLASTN+IslandViewer 251354.gbk
229685633614539290Island text1.4931726.443329.4121Neighbours11BLASTN+IslandViewer 296856.gbk