Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015499: Thermodesulfobium narugense DSM 14796 chromosome, complete genome

NCBI: NC_015499

Host Lineage: Thermodesulfobium narugense; Thermodesulfobium; Thermodesulfobiaceae; Thermoanaerobacterales; Firmicutes; Bacteria

General Information: Environment: Hot spring; Isolation: Narugo hot spring; Japan; Temp: Thermophile; Temp: 50C. This organism is a moderate thermophilic autotroph that was able to grow onH2/CO2 by sulfate respiration. It was isolated from a hot spring in Narugo, Japan.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1119200*16551846319Island text1.6613718.189530.0861Neighbours21BLASTN+119200.gbk
219794521851920575Island text1.555518.198836.529Neighbours21BLASTN+197945.gbk
3309394*33237022977Island text1.5042219.009528.2301Neighbours21BLASTN+309394.gbk
435293437645123518Island text1.5661818.056934.7789Neighbours21BLASTN352934.gbk
541789643754419649Island text1.8712617.631332.0685Neighbours21BLASTN+IslandViewer 417896.gbk
6491423*51900327581Island text2.1212819.912537.6364Neighbours21BLASTN491423.gbk
71062359*108673824380Island text3.0834526.475236.2384Neighbours21BLASTN+1062359.gbk
81097432112442226991Island text1.5466116.08132.8846Neighbours21BLASTN1097432.gbk
91167932*119092722996Island text1.5409517.713428.8708Neighbours21BLASTN+1167932.gbk
101372361*139316420804Island text1.9403918.835133.6121Neighbours21BLASTN1372361.gbk
111403447*142823724791Island text1.9265917.676936.0884Neighbours21BLASTN1403447.gbk
121466794*148650419711Island text1.5172118.342736.3321Neighbours21BLASTN+1466794.gbk
131493500151659923100Island text1.8001320.291538.3121Neighbours21BLASTN+1493500.gbk
141640500166044319944Island text1.8366320.064233.8105Neighbours21BLASTN1640500.gbk
151790186180859918414Island text1.5939317.090230.5397Neighbours21BLASTN1790186.gbk