Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015497: Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genome

NCBI: NC_015497

Host Lineage: Glaciecola; Glaciecola; Alteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Environment: Sea water; Temp: Psychrophile. Isolated from subseafloor sediments at Suruga Bay in Japan and is capable of efficiently hydrolyzing cellulose and xylan.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1375909*39391518007Island text1.7063326.079210.8661Neighbours21BLASTN375909.gbk
21058980108342024441Island text1.4682128.313538.7928Neighbours21BLASTN1058980.gbk
31287877133880050924Island text2.2647227.57733.7954Neighbours21BLASTN+IslandViewer 1287877.gbk
42831148285457323426Island text1.570426.994226.2578Neighbours21BLASTN+2831148.gbk
52859724287821718494Island text1.8369226.121731.3802Neighbours21BLASTN+2859724.gbk
62997275*302162024346Island text1.5845125.012239.9501Neighbours21BLASTN+2997275.gbk
73497680352054322864Island text1.5293825.550216.6707Neighbours21BLASTN3497680.gbk
83614817364057525759Island text1.3663726.836144.6705Neighbours42BLASTN+3614817.gbk
93739556376829828743Island text2.2404528.782424.1436Neighbours21BLASTN3739556.gbk
103794000381999125992Island text1.458326.288929.4311Neighbours42BLASTN+3794000.gbk
114564339458876824430Island text1.6456125.623220.4288Neighbours21BLASTN+4564339.gbk
124683741*471290029160Island text2.466129.522421.7021Neighbours21BLASTN+IslandViewer 4683741.gbk