Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015496: Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genome

NCBI: NC_015496

Host Lineage: Krokinobacter; Krokinobacter; Flavobacteriaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: Environment: Sea water, Sediment; Temp: Psychrophile; Temp: 15-25. Isolated from sub-seafloor sediments.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11288377*131298524609Island text1.439523.382832.3791Neighbours21BLASTN+IslandViewer 1288377.gbk
21590674160935718684Island text1.5933220.646936.6853Neighbours21BLASTN1590674.gbk
31857900*188345925560Island text2.4884126.720643.1579Neighbours21BLASTN1857900.gbk
42079156*209909919944Island text1.7188521.513329.8697Neighbours21BLASTN2079156.gbk
52155816*217983124016Island text1.5672423.124442.6179Neighbours21BLASTN2155816.gbk
62279829*230281922991Island text1.5102622.467843.1782Neighbours21BLASTN+2279829.gbk
72371163*240654735385Island text2.4242326.607939.5491Neighbours21BLASTN2371163.gbk
82436089*246034324255Island text2.8603125.641441.646Neighbours21BLASTN2436089.gbk
93256372*327756721196Island text2.0778322.349212.3249Neighbours21BLASTNIslandViewer 3256372.gbk