Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015474: Pyrococcus sp. NA2 chromosome, complete genome

NCBI: NC_015474

Host Lineage: Pyrococcus; Pyrococcus; Thermococcaceae; Thermococcales; Euryarchaeota; Archaea

General Information: Pyrococcus has similar characteristics of other thermoautotrophican archaea such as Archaeoglobus, and Methanococcus in the respect that they are all thermophilic and anaerobic. Pyrococcus differs, however, because its optimal growth temperature is nearly 100 °C and dwells at a greater sea depth than the other archaea. Studying Pyrococcus helps give insight to possible mechanisms used to endure extreme environmental conditions like high temperatures and high pressure.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1721039198219880Island text1.8231926.760140.145Neighbours36BLASTN+72103.gbk
2105075*12960724533Island text1.7828629.788250.1466Neighbours21BLASTN105075.gbk
3182701*20390121201Island text1.6172425.630344.171Neighbours21BLASTN+182701.gbk
4252390*28520932820Island text1.8434228.886947.4956Neighbours36BLASTN+252390.gbk
5301428*32009918672Island text2.0305431.302752.4871Neighbours36BLASTN301428.gbk
632850034919620697Island text1.9314326.486538.9816Neighbours36BLASTN+328500.gbk
7448939*46805119113Island text1.5110227.675140.4069Neighbours36BLASTN+448939.gbk
8487517*51009922583Island text1.4975627.255635.7534Neighbours21BLASTN+487517.gbk
9538544*57932340780Island text1.6840928.594247.9843Neighbours36BLASTN+538544.gbk
10644552*67352528974Island text2.5605743.141433.9133Neighbours36BLASTN644552.gbk
11723553*78401560463Island text1.5505828.460743.0381Neighbours21BLASTN+723553.gbk
12983468*100758524118Island text1.5175728.447237.6782Neighbours36BLASTN+983468.gbk
131035834105891923086Island text2.0564728.258854.3367Neighbours36BLASTN1035834.gbk
141094000*111962225623Island text1.6028934.771534.5796Neighbours36BLASTN1094000.gbk
151185478120979924322Island text1.7791428.731245.9848Neighbours21BLASTN+1185478.gbk
161216971*124122624256Island text1.9492226.443941.5337Neighbours36BLASTN1216971.gbk
171432065*145759325529Island text1.6852931.162940.5547Neighbours36BLASTN+1432065.gbk
181490668*151078020113Island text1.6702530.463541.0706Neighbours36BLASTN1490668.gbk
191794879181809923221Island text1.6162826.173445.6268Neighbours21BLASTN+IslandViewer 1794879.gbk
201849509*187599926491Island text1.4807727.754142.7945Neighbours21BLASTN+1849509.gbk