Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015460: Gallibacterium anatis UMN179 chromosome, complete genome

NCBI: NC_015460

Host Lineage: Gallibacterium anatis; Gallibacterium; Pasteurellaceae; Pasteurellales; Proteobacteria; Bacteria

General Information: Isolated from a peritonitis lesion of a laying hen in Iowa, USA. Animal pathogen. Gram-negative, nonmotile, rod-shaped bacterium.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
141882644021921394Island text1.5787830.450550.0297Neighbours24BLASTN+418826.gbk
21687684*170876521082Island text1.5879233.25750.2699Neighbours325BLASTN1687684.gbk
32403004242225419251Island text1.9452826.480428.5784Neighbours21BLASTNIslandViewer 2403004.gbk
42602416262318920774Island text1.5699427.910742.3133Neighbours21BLASTN+2602416.gbk