Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015458: Pusillimonas sp. T7-7 chromosome, complete genome

NCBI: NC_015458

Host Lineage: Pusillimonas; Pusillimonas; Alcaligenaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Isolated from the benthal mud of a petroleum-contaminated site in Bohai Sea, China. Gram-negative bacterium isolated from the seabed mud of Bohai Sea, in a petroleum-contaminated region. It is cold tolerant (grows between 4 to 37°C, optimum 30°C), salt tolerant (5% NaCl), and able to utilize diesel oils as the sole carbon source for growth.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
132700936547138463Island text1.7226325.366118.5932Neighbours11BLASTN+IslandViewer 327009.gbk
21692401171310220702Island text1.5475628.252737.866Neighbours11BLASTN+IslandViewer 1692401.gbk
31938860196301624157Island text1.6572427.264934.9663Neighbours14BLASTN+IslandViewer 1938860.gbk
42338437*237239533959Island text1.595625.749339.0518Neighbours13BLASTN+IslandViewer 2338437.gbk
52441435246619024756Island text1.6229827.750744.6274Neighbours11BLASTN+2441435.gbk
62614108*264388729780Island text2.1394232.43443.9568Neighbours11BLASTN+IslandViewer 2614108.gbk
72998000*302249324494Island text1.7774733.622833.0569Neighbours11BLASTN+IslandViewer 2998000.gbk
83077804*310090323100Island text1.6959234.195423.7417Neighbours11BLASTN+3077804.gbk
93328905335692528021Island text2.2573335.787440.6864Neighbours41BLASTN+IslandViewer 3328905.gbk
103390674341151520842Island text1.5662628.340837.1802Neighbours14BLASTN+IslandViewer 3390674.gbk