Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015437: Selenomonas sputigena ATCC 35185 chromosome, complete genome

NCBI: NC_015437

Host Lineage: Selenomonas sputigena; Selenomonas; Veillonellaceae; Selenomonadales; Firmicutes; Bacteria

General Information: Environment: Gastrointestinal tract, Host, Respiratory; Isolation: Subgingival sulcus. Temp: Mesophile; Temp: 37C. Selenomonas sputigena is commonly isolated from the oral cavity of humans.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
127325*8249655172Island text3.0852342.673439.5118Neighbours362BLASTN+IslandViewer 27325.gbk
216419418725523062Island text1.7956631.69232.4718Neighbours114BLASTN+IslandViewer 164194.gbk
3227420*24509917680Island text1.5291727.962441.3753Neighbours11BLASTN+IslandViewer 227420.gbk
443853846895530418Island text2.2182635.098537.4216Neighbours11BLASTN+IslandViewer 438538.gbk
5572788*59451621729Island text1.7423929.843141.1804Neighbours11BLASTN+IslandViewer 572788.gbk
6697051*73429337243Island text2.9936841.646523.7798Neighbours31BLASTN+IslandViewer 697051.gbk
776757279017322602Island text1.7064533.623136.6821Neighbours114BLASTN767572.gbk
8816719*83509918381Island text1.7171127.453227.1714Neighbours114BLASTN816719.gbk
9918614*94272824115Island text1.8626524.656547.7464Neighbours11BLASTN918614.gbk
101038476*105935320878Island text1.9774731.313849.8767Neighbours11BLASTN+1038476.gbk
111066014109667930666Island text2.1345434.011631.5124Neighbours31BLASTN+IslandViewer 1066014.gbk
121494777151411019334Island text1.5484127.860540.7266Neighbours114+IslandViewer 1494777.gbk
131685824171269926876Island text1.695432.443745.8217Neighbours11BLASTN+IslandViewer 1685824.gbk
142164997*218559920603Island text1.660529.078740.3155Neighbours11BLASTN2164997.gbk
152331082235134620265Island text1.5377728.891125.8883Neighbours11BLASTN+IslandViewer 2331082.gbk
162354429237706322635Island text1.6163729.709249.042Neighbours11BLASTN+2354429.gbk