Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015436: Spirochaeta coccoides DSM 17374 chromosome, complete genome

NCBI: NC_015436

Host Lineage: Sphaerochaeta coccoides; Sphaerochaeta; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Country: Cuba; Environment: Host; Isolation: Hindgut of the termite Neotermes castaneus; Temp: 30C; Temp: Mesophile. This is a coccoid spirochete that was isolated from the hindgut contents of the termite Neotermes castaneus.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11*2089120891Island text1.5265828.225317.3346Neighbours312+IslandViewer 1.gbk
220238422194219559Island text1.5118432.429544.0249Neighbours312BLASTN202384.gbk
327082029216721348Island text1.5085932.660522.6459Neighbours31BLASTN+IslandViewer 270820.gbk
4440033*46023320201Island text1.6754528.653920.4572Neighbours312BLASTN+440033.gbk
5474710*50587231163Island text4.3010640.097919.7729Neighbours23BLASTNIslandViewer 474710.gbk
61287873131031722445Island text1.4330728.696516.5245Neighbours312+IslandViewer 1287873.gbk
71322087134845126365Island text1.5487428.773123.2443Neighbours312BLASTN+IslandViewer 1322087.gbk
81758257*178406425808Island text2.1124430.561826.8973Neighbours23BLASTN+IslandViewer 1758257.gbk