Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015435: Metallosphaera cuprina Ar-4 chromosome, complete genome

NCBI: NC_015435

Host Lineage: Metallosphaera cuprina; Metallosphaera; Sulfolobaceae; Sulfolobales; Crenarchaeota; Archaea

General Information: This strain is new species of the genus Metallosphaera that was isolated from the muddy water of a sulfuric hot spring in Yunnan province, China.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
121736*4690925174Island text2.0905225.472645.4015Neighbours21BLASTN21736.gbk
2120334*13927018937Island text1.8401725.328338.001Neighbours21BLASTN120334.gbk
325195827513523178Island text1.8429626.176846.9Neighbours36BLASTN251958.gbk
4310406*32990319498Island text1.7036127.13742.9305Neighbours36BLASTN+310406.gbk
5354837*37818123345Island text1.6296224.939234.7911NeighboursBLASTN354837.gbk
6537483*55727419792Island text1.6609825.68334.7972Neighbours36BLASTN+537483.gbk
7570980*59465523676Island text1.4353925.431717.3285Neighbours21BLASTN570980.gbk
860734563009922755Island text1.4540126.100434.4013Neighbours21BLASTN+IslandViewer 607345.gbk
982585384859922747Island text5.6718225.880718.5414Neighbours21825853.gbk
101010973103737226400Island text1.6569528.617129.8606Neighbours3841010973.gbk
111180455120038719933Island text1.49925.826824.662Neighbours384BLASTN+1180455.gbk
121632391165441422024Island text1.8255725.786344.5152Neighbours36BLASTN+1632391.gbk
131713051*173471221662Island text1.6155125.996132.6887Neighbours21BLASTN+1713051.gbk
141752500*177075118252Island text1.8802324.509618.3092Neighbours21BLASTN1752500.gbk
151781492*180120019709Island text2.5737525.424636.5708Neighbours21BLASTN1781492.gbk