Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015434: Verrucosispora maris AB-18-032 chromosome, complete genome

NCBI: NC_015434

Host Lineage: Verrucosispora maris; Verrucosispora; Micromonosporaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Verrucosispora sp. AB-18-032 is a filamentous bacterium belonging in the Micromonosporaceae family of the Actinobacteria. It produces abyssomicin (inhibitor of para-aminobenzoic acid biosynthesis which is an precursor of folic acid) and proximicin (furan-containing peptide with weak antibiotic effect and strong antitumor properties).



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
15411*2875223342Island text2.1549215.018915.7119Neighbours11BLASTN+5411.gbk
2228912*25262723716Island text1.8669114.861522.6575Neighbours11BLASTN+IslandViewer 228912.gbk
3666692*70459937908Island text2.8177616.6514.7206Neighbours11BLASTN+IslandViewer 666692.gbk
41173794119997026177Island text2.2352215.904317.7801Neighbours11BLASTN+1173794.gbk
51313979*133209918121Island text1.6682212.666214.5146Neighbours11BLASTN+1313979.gbk
61671532169059919068Island text1.5627212.064316.3784Neighbours11BLASTN+1671532.gbk
71885373*191209926727Island text2.9206716.254222.6646Neighbours11BLASTN+1885373.gbk
82375439239859923161Island text2.7381715.709615.5845Neighbours11BLASTN+IslandViewer 2375439.gbk
92438202245793719736Island text1.6221212.334311.5138Neighbours11BLASTN+2438202.gbk
102460053249159931547Island text1.6389713.827219.8973Neighbours11BLASTN+IslandViewer 2460053.gbk
112527412255409926688Island text1.994215.980219.0045Neighbours11BLASTN+IslandViewer 2527412.gbk
122657781268051822738Island text1.4806615.099.86113Neighbours11BLASTN+2657781.gbk
132683631270625822628Island text1.6032413.354215.7945Neighbours11BLASTN+2683631.gbk
143507059353432627268Island text1.7632620.372635.1397Neighbours11BLASTNIslandViewer 3507059.gbk
153581001*361002729027Island text1.5840918.832829.968Neighbours11BLASTN+IslandViewer 3581001.gbk
163755560*378375828199Island text2.1662116.692918.4063Neighbours11BLASTNIslandViewer 3755560.gbk
174166755418579019036Island text1.5409412.238618.1874Neighbours11BLASTN4166755.gbk
184640769*466756226794Island text1.9244616.814821.0286Neighbours11BLASTN4640769.gbk
195434500*545318818689Island text1.5792512.562820.4562Neighbours11BLASTN+IslandViewer 5434500.gbk
206020178604719227015Island text2.7185715.982716.2165Neighbours11BLASTN+IslandViewer 6020178.gbk
216415555*644829432740Island text3.3440419.967726.6343Neighbours11BLASTN6415555.gbk
226508500652647917980Island text1.9574611.74318.77086Neighbours11BLASTNIslandViewer 6508500.gbk