Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015433: Streptococcus suis ST3 chromosome, complete genome

NCBI: NC_015433

Host Lineage: Streptococcus suis; Streptococcus; Streptococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Most streptococci are facultative anaerobes, and some are obligate anaerobes. Serologic grouping is based on antigenic differences in cell wall carbohydrates, in cell wall pili-associated protein, and in the polysaccharide capsule in group B streptococci. This organism is a pathogen of pigs and is responsible for a variety of diseases including meningitis, arthritis and pneumonia. Occasionally this organism can infect humans causing septicemia, meningitis and endocarditis



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
128558130862523045Island text2.556436.314452.0506Neighbours16BLASTN+IslandViewer 285581.gbk
2791364*81692925566Island text1.8527730.74941.1548Neighbours21BLASTN791364.gbk
31315363*133501019648Island text1.4960329.006624.0711Neighbours21BLASTNIslandViewer 1315363.gbk
41998427201777319347Island text2.4512534.677353.2091Neighbours21BLASTN+IslandViewer 1998427.gbk