Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015428: Lactobacillus buchneri NRRL B-30929 chromosome, complete genome

NCBI: NC_015428

Host Lineage: Lactobacillus buchneri; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Environment: Host, Intestinal microflora; Isolation: Fuel ethanol production facility; Temp: Mesophile. Lactobacillus buchneri is a lactic acid bacillus commonly isolated from dairy and plant products as well as the human oral cavity. This organism is heterofermentative, producing acetic and lactic acid. It also has potential for use as a biofuel producing agent.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1217244030818585Island text1.5651522.285416.3479Neighbours21BLASTN+21724.gbk
219381721377819962Island text1.6576822.768720.5445Neighbours21BLASTN+IslandViewer 193817.gbk
3700479*72176721289Island text1.9327838.883851.9795Neighbours320BLASTN700479.gbk
4823420*84476521346Island text1.8227537.5452.0309Neighbours320BLASTN+823420.gbk
51483768150522421457Island text1.6293426.781430.9965Neighbours21BLASTN+IslandViewer 1483768.gbk
61544728*159936054633Island text1.9175425.645227.7956Neighbours21BLASTN+IslandViewer 1544728.gbk
71668465*168767919215Island text1.5169431.371643.1234Neighbours21BLASTN+1668465.gbk
82019500*203914519646Island text1.5685523.215621.647Neighbours21+2019500.gbk
92291430*231538823959Island text1.5416730.559940.4312Neighbours320BLASTN+2291430.gbk