Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015424: Aeromonas veronii B565 chromosome, complete genome

NCBI: NC_015424

Host Lineage: Aeromonas veronii; Aeromonas; Aeromonadaceae; Aeromonadales; Proteobacteria; Bacteria

General Information: Aeromonas veronii is a Gram-negative, rod-shaped bacterium found in fresh water and in association with animals. It can be a pathogen of humans and a beneficial symbiont of leeches. In humans A. veronii can cause diseases ranging from wound infections and diarrhea to septicemia in immunocompromised patients. In leeches, this bacterium is thought to function in the digestion of blood, provision of nutrients or preventing other bacteria from growing.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
152503954529820260Island text1.6055335.355942.09Neighbours11BLASTN525039.gbk
2748785*77389925115Island text2.0275533.513834.5114Neighbours11BLASTN+748785.gbk
31603000*163382230823Island text2.9977545.265927.6604Neighbours11BLASTN+IslandViewer 1603000.gbk
41689500172544435945Island text4.7696453.035825.461Neighbours53BLASTN+IslandViewer 1689500.gbk
51987964201070722744Island text1.5743433.694130.1498Neighbours15BLASTN+1987964.gbk
62316228235664140414Island text2.737641.633229.55Neighbours15BLASTN+IslandViewer 2316228.gbk
72357600*239563038031Island text2.6490242.588828.7522Neighbours53BLASTN+IslandViewer 2357600.gbk
82462522248308820567Island text1.5610829.11326.0141Neighbours15BLASTN+IslandViewer 2462522.gbk
92510764253353522772Island text1.6466731.65326.5475Neighbours11BLASTN2510764.gbk
102695847271872522879Island text1.5555930.656638.3394Neighbours11BLASTN2695847.gbk
112726223*277096744745Island text2.2011236.899835.011Neighbours11BLASTN+2726223.gbk
122836920*285959922680Island text2.300539.813123.0401Neighbours11BLASTN+IslandViewer 2836920.gbk
132917817294087823062Island text1.4114429.614529.2301Neighbours11BLASTN+IslandViewer 2917817.gbk
143112637*318003367397Island text3.5212546.021531.814Neighbours14BLASTN+IslandViewer 3112637.gbk
153277292330051523224Island text1.4190328.866730.0037Neighbours11BLASTN3277292.gbk
163520783357390853126Island text3.1106243.694227.0814Neighbours13BLASTN+IslandViewer 3520783.gbk
173890293*391528924997Island text1.9167736.204534.2109Neighbours11BLASTNIslandViewer 3890293.gbk
184251369*427627324905Island text2.3098937.901340.0401Neighbours11BLASTN4251369.gbk