Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015422: Alicycliphilus denitrificans K601 chromosome, complete genome

NCBI: NC_015422

Host Lineage: Alicycliphilus denitrificans; Alicycliphilus; Comamonadaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Country: Germany; Isolation: Anaerobic sewage sludge; Temp: Mesophile. Alicycliphilus denitrificans is able to degrade cyclohexanol and other alicyclic compounds under denitrifying conditions.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111870118701Island text1.7662315.068724.327Neighbours11BLASTN+IslandViewer 1.gbk
270450075861254113Island text2.5491523.144429.7157Neighbours11BLASTNIslandViewer 704500.gbk
3910292*93677826487Island text1.8505319.284720.8863Neighbours11BLASTN+910292.gbk
41116359*114310426746Island text2.6139723.944634.9036Neighbours11BLASTN+IslandViewer 1116359.gbk
51163752119065526904Island text1.6309516.31227.4759Neighbours11BLASTN+1163752.gbk
61643000*166547622477Island text1.8334319.017518.7991Neighbours11BLASTN+IslandViewer 1643000.gbk
71694363172115326791Island text2.2898122.386513.9424Neighbours11BLASTN+IslandViewer 1694363.gbk
81876102190372527624Island text1.7446819.505826.419Neighbours11BLASTN+IslandViewer 1876102.gbk
92078618211032231705Island text2.2573823.129815.6342Neighbours11BLASTN+IslandViewer 2078618.gbk
102126614214813621523Island text1.5966219.124515.6414Neighbours11BLASTN2126614.gbk
112326942235046523524Island text2.5493426.612520.0116Neighbours11BLASTN+IslandViewer 2326942.gbk
122806832284558938758Island text2.4298523.354618.5106Neighbours11BLASTN+IslandViewer 2806832.gbk
132858228292680368576Island text2.2053222.311619.5671Neighbours11BLASTN+IslandViewer 2858228.gbk
143184823*320638321561Island text2.3977620.126219.3994Neighbours11BLASTN+IslandViewer 3184823.gbk
153366500*339127624777Island text2.2220325.828925.2365Neighbours11BLASTN+IslandViewer 3366500.gbk
163413386*345459941214Island text1.9047819.212920.5704Neighbours11BLASTN+IslandViewer 3413386.gbk
173493396351574822353Island text1.677417.718521.2358Neighbours11BLASTN+3493396.gbk
183513689*356513551447Island text2.0001320.38218.6157Neighbours11BLASTN+IslandViewer 3513689.gbk
193581848*360595924112Island text2.0557721.760621.2614Neighbours11BLASTN+IslandViewer 3581848.gbk
203836911*386031223402Island text2.5415825.729123.9777Neighbours11BLASTN+IslandViewer 3836911.gbk
214395388*441939024003Island text1.8147320.213736.5173Neighbours11BLASTNIslandViewer 4395388.gbk
224508028454712739100Island text1.9623119.25616.1307Neighbours11BLASTN+IslandViewer 4508028.gbk
234822636484333720702Island text1.5907319.195929.1976Neighbours11BLASTN4822636.gbk