Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015420: Lactobacillus buchneri NRRL B-30929 plasmid pLBUC01, complete

NCBI: NC_015420

Host Lineage: Lactobacillus buchneri; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Environment: Host, Intestinal microflora; Isolation: Fuel ethanol production facility; Temp: Mesophile. Lactobacillus buchneri is a lactic acid bacillus commonly isolated from dairy and plant products as well as the human oral cavity. This organism is heterofermentative, producing acetic and lactic acid. It also has potential for use as a biofuel producing agent.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1353846199926616Island text1.7168717.798524.1564Neighbours21BLASTN+35384.gbk