Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015416: Methanosaeta concilii GP-6 chromosome, complete genome

NCBI: NC_015416

Host Lineage: Methanosaeta concilii; Methanosaeta; Methanosaetaceae; Methanosarcinales; Euryarchaeota; Archaea

General Information: Methanosaeta, the predominant methane producer on earth, has received little attention in recent years due to its slow growth and difficulties in culturing. Therefore, the genome sequence is a valuable source of information about this microbe and offers the most tractable approach to understanding its physiology. Furthermore, the genome sequence of Methanosaeta concilii GP-6 significantly increases our knowledge of the role of acetate-utilizing methanoarchaea in the global carbon cycle, and also allows for a more complete comparative genomics analysis of methanogenic archaea as now both genera of aceticlastic methanoarchaea are now represented.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
116128918676825480Island text2.0992732.020225.4761Neighbours321BLASTN+IslandViewer 161289.gbk
222396824735523388Island text1.863429.179818.8939Neighbours321BLASTN+IslandViewer 223968.gbk
352501854987224855Island text2.0421233.090819.6152Neighbours321BLASTN+IslandViewer 525018.gbk
462151364686825356Island text1.4934931.359417.0301Neighbours321BLASTN+IslandViewer 621513.gbk
51039144106320424061Island text2.1344833.460719.5806Neighbours321BLASTN1039144.gbk
61103900*112638722488Island text1.7278330.204319.2776Neighbours321BLASTN+IslandViewer 1103900.gbk
71478775*150671227938Island text3.1373639.545218.5528Neighbours321BLASTN+IslandViewer 1478775.gbk
81542202156869726496Island text2.047432.488217.5976Neighbours321BLASTN+1542202.gbk
91571451160159930149Island text2.3547835.857523.8849Neighbours321BLASTN+IslandViewer 1571451.gbk
101645419*166828222864Island text1.6223831.487116.5794Neighbours321BLASTN+IslandViewer 1645419.gbk
111679188*171330634119Island text2.9119244.793837.6316Neighbours321BLASTN+IslandViewer 1679188.gbk
121832759185942526667Island text1.6033629.067422.1282Neighbours321BLASTN+IslandViewer 1832759.gbk
131872000189612124122Island text1.8966630.210415.8972Neighbours321BLASTN+IslandViewer 1872000.gbk
142113949*213709923151Island text2.1310634.594522.6466Neighbours321BLASTN+IslandViewer 2113949.gbk
152292555*231243519881Island text1.5256331.073741.2322Neighbours321BLASTN+2292555.gbk
162374000239384719848Island text1.7973530.024319.5523Neighbours321BLASTN+IslandViewer 2374000.gbk
172692536271686624331Island text1.6472728.100717.56Neighbours321BLASTN+IslandViewer 2692536.gbk
182723189277124748059Island text1.7626230.81224.5329Neighbours321BLASTN+IslandViewer 2723189.gbk
192785514*280809922586Island text1.4707729.541632.4826Neighbours321BLASTN+2785514.gbk
202838020285712919110Island text1.5808128.517114.009Neighbours321BLASTN+IslandViewer 2838020.gbk
212864917288659921683Island text1.8676131.980926.3891Neighbours321BLASTN+2864917.gbk
222926236*294560219367Island text1.5635829.413923.2824Neighbours321BLASTN+2926236.gbk
232967511300460637096Island text2.1347331.144617.8534Neighbours21BLASTN+IslandViewer 2967511.gbk