Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015408: Chlamydophila pecorum E58 chromosome, complete genome

NCBI: NC_015408

Host Lineage: Chlamydia pecorum; Chlamydia; Chlamydiaceae; Chlamydiales; Chlamydiae; Bacteria

General Information: C. pecorum is a species of Chlamydiaceae prevalent in mammals, notably: cattle, sheep and goats (ruminants), koalas (marsupials), and swine. C. pecorum strains are serologically and pathogenically diverse. E58 is the first C. pecorum strain sequenced.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1404778*43032125544Island text1.4870424.981845.6207Neighbours21BLASTN404778.gbk
256198758067918693Island text1.5061726.301144.0492Neighbours314BLASTN+561987.gbk
31035690*106145025761Island text1.5060823.394944.6888Neighbours21BLASTN1035690.gbk