Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015391: Carnobacterium sp. 17-4 chromosome, complete genome

NCBI: NC_015391

Host Lineage: Carnobacterium; Carnobacterium; Carnobacteriaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Seawater. Norway: Isfjord, Spitsbergen. Isolated from permanently cold seawater. Carnobacteria are ubiquitous lactic acid bacteria, which have been frequently isolated from temperate to polar aquatic environments and food products such as seafood, dairy, and meat.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1448833*47230923477Island text1.5652822.511928.7942Neighbours21BLASTN+448833.gbk
250422752261118385Island text1.4966222.306731.8614Neighbours21+504227.gbk
3695350*71865123302Island text1.5689119.449233.847Neighbours21BLASTN695350.gbk
41013608*103374320136Island text1.5420919.978131.6299Neighbours21BLASTN1013608.gbk
51248583*126959921017Island text1.7416721.873528.6454Neighbours21BLASTN+1248583.gbk
61323171*134609922929Island text1.5329619.163434.5414Neighbours21BLASTN1323171.gbk
71551959157114019182Island text1.6564519.564732.3852Neighbours21BLASTN1551959.gbk
82059191*209896139771Island text1.9149720.732237.0147Neighbours21BLASTN2059191.gbk
92099472211871519244Island text1.8974519.789635.7443Neighbours21BLASTN2099472.gbk
102449927246920719281Island text1.7934519.907232.2451Neighbours21BLASTN+2449927.gbk
112488450250774219293Island text1.5321421.175828.8129Neighbours21BLASTN2488450.gbk
122523451*255656933119Island text1.6013820.325929.559Neighbours21BLASTN+2523451.gbk