Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015388: Desulfobacca acetoxidans DSM 11109 chromosome, complete genome

NCBI: NC_015388

Host Lineage: Desulfobacca acetoxidans; Desulfobacca; Syntrophaceae; Syntrophobacterales; Proteobacteria; Bacteria

General Information: Country: Netherlands; Environment: Fresh water, Fresh water; Isolation: Anaerobic granular sludge of a pilot-scale; Temp: Mesophile; Temp: 37C. This organism is able to grow with acetate as the sole carbon source using sulfate or other inorganic sulfur compounds as electron acceptors.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
18900011076621767Island text1.6672334.305835.4271Neighbours32BLASTN89000.gbk
226930131222342923Island text1.9448136.364426.8707Neighbours32BLASTN+269301.gbk
3719669*74287923211Island text1.6111629.693617.2555Neighbours32BLASTN+719669.gbk
41020747105083030084Island text1.7989730.53420.8323Neighbours22BLASTN+IslandViewer 1020747.gbk
51161740118508723348Island text1.6667935.116721.7262Neighbours32BLASTN1161740.gbk
61612000*163494022941Island text1.4395131.669529.9184Neighbours310BLASTN+1612000.gbk
71678000170390225903Island text1.6417829.547743.8665Neighbours346BLASTN+1678000.gbk
81861710188520423495Island text1.5050832.16237.4772Neighbours32BLASTN1861710.gbk
91913118*193409920982Island text1.6542728.777623.0089Neighbours32BLASTN1913118.gbk
102011280203326421985Island text1.521433.201829.8131Neighbours11+2011280.gbk
112143329*217016326835Island text3.1490342.257724.2285Neighbours32BLASTN+IslandViewer 2143329.gbk
122211828*223487523048Island text1.4617528.3528.4931Neighbours32BLASTN2211828.gbk
132434922246448729566Island text3.8333443.389416.812Neighbours32BLASTN+2434922.gbk
142499187252209922913Island text1.6001528.313518.2483Neighbours32BLASTN2499187.gbk
152921000*294759926600Island text2.6140940.271118.9811Neighbours32BLASTN+2921000.gbk
163125566*314532419759Island text1.5192528.149330.6493Neighbours32BLASTN+3125566.gbk