Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015387: Marinithermus hydrothermalis DSM 14884 chromosome, complete genome

NCBI: NC_015387

Host Lineage: Marinithermus hydrothermalis; Marinithermus; Thermaceae; Thermales; Deinococcus-Thermus; Bacteria

General Information: Environment: Marine; Isolation: deep-sea hydrothermal vent chimney sample; Temp: Thermophile; Temp: 67.5C; Country:Japan: Izu-Bonin Arc, Suiyo Seamount. This is a strictly aerobic, thermophilic marine bacterium isolated from a deep-sea hydrothermal vent chimney sample collected from the Suiyo Seamount in the Izu-Bonin Arc, Japan, at a depth of 1385 m.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
115572817893223205Island text1.7792314.643125.6182Neighbours11BLASTN+155728.gbk
226179928460422806Island text2.0458818.805521.8271Neighbours11BLASTN261799.gbk
394297497062027647Island text1.6757623.45418.3844Neighbours11BLASTN+IslandViewer 942974.gbk
41002955103001227058Island text1.8828316.029332.1903Neighbours11BLASTN+1002955.gbk
51091403111519023788Island text2.2833421.878521.9039Neighbours11BLASTN+IslandViewer 1091403.gbk
61278471*129937220902Island text2.2146815.93230.631Neighbours11BLASTN+IslandViewer 1278471.gbk
71344467*136650122035Island text1.6063117.850220.5698Neighbours11BLASTN1344467.gbk
81803938*184009936162Island text3.1607223.150732.9197Neighbours11BLASTN+IslandViewer 1803938.gbk
91898496*191959921104Island text2.2397215.948726.3217Neighbours11BLASTNIslandViewer 1898496.gbk
101965711198901123301Island text1.5373316.932118.3884Neighbours11BLASTN1965711.gbk
112042042*206360521564Island text1.7643518.389621.9058Neighbours11BLASTN+IslandViewer 2042042.gbk
122072237*209658824352Island text1.649822.753332.7075Neighbours11BLASTN+2072237.gbk