Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015386: Treponema succinifaciens DSM 2489 plasmid pTRESU01, complete

NCBI: NC_015386

Host Lineage: Treponema succinifaciens; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Environment: Host; Isolation: colon of swine; Temp: Mesophile; Isolation:colon. This organism is an obligately anaerobic spirochete isolated from the colon of a swine.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
110700012611919120Island text1.956622.741437.4406Neighbours340BLASTN+107000.gbk
212549914966624168Island text1.4119130.119233.3902Neighbours340BLASTN+125499.gbk
315000017349923500Island text2.2533622.767745.5756Neighbours21BLASTN+150000.gbk