Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015385: Treponema succinifaciens DSM 2489 chromosome, complete genome

NCBI: NC_015385

Host Lineage: Treponema succinifaciens; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Environment: Host; Isolation: colon of swine; Temp: Mesophile; Isolation:colon. This organism is an obligately anaerobic spirochete isolated from the colon of a swine.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
128800031108023081Island text1.9100922.160729.9123Neighbours21BLASTN288000.gbk
2351393*37496623574Island text1.4752133.359723.1636Neighbours340BLASTN351393.gbk
3456000*48065124652Island text2.5706439.450340.9698Neighbours340BLASTN+456000.gbk
4965341*98959924259Island text2.1756937.286336.7266Neighbours340BLASTN+965341.gbk
51122794*114628023487Island text2.0243737.653134.0818Neighbours340BLASTN1122794.gbk
61406419143236425946Island text1.8032534.502336.6033Neighbours340BLASTN+1406419.gbk
71838268187465836391Island text1.4587224.149538.544Neighbours340BLASTN1838268.gbk
81875671191009934429Island text1.6323333.197935.6886Neighbours340BLASTN+1875671.gbk
92050648*208291832271Island text2.0128237.724134.2675Neighbours31BLASTN+2050648.gbk
102135456215553720082Island text1.6412330.671223.0856Neighbours340+2135456.gbk
112505977*254990543929Island text1.809635.111428.1726Neighbours340BLASTN+2505977.gbk