Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015383: Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequence

NCBI: NC_015383

Host Lineage: Burkholderia gladioli; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Together with Burkholderia glumae, B. gladioli is a causal agent in rice sheath rot and rice grain rot. The occurrence of B. gladioli has been wide-spread in many countries and considered as potential pathogens for great damage in rice production.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
122903624724318208Island text1.5242724.100223.5047Neighbours11BLASTN+229036.gbk
236850039173623237Island text1.6018625.647826.4479Neighbours11BLASTN+368500.gbk