Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015382: Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence

NCBI: NC_015382

Host Lineage: Burkholderia gladioli; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Together with Burkholderia glumae, B. gladioli is a causal agent in rice sheath rot and rice grain rot. The occurrence of B. gladioli has been wide-spread in many countries and considered as potential pathogens for great damage in rice production.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
117221319334021128Island text1.8863922.704117.9185Neighbours11BLASTN+172213.gbk
226600029199926000Island text1.4366323.1736.8072Neighbours11BLASTN+266000.gbk