Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015381: Burkholderia gladioli BSR3 chromosome 1, complete sequence

NCBI: NC_015381

Host Lineage: Burkholderia gladioli; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Together with Burkholderia glumae, B. gladioli is a causal agent in rice sheath rot and rice grain rot. The occurrence of B. gladioli has been wide-spread in many countries and considered as potential pathogens for great damage in rice production.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111877618776Island text1.9387623.886723.3126Neighbours11BLASTNIslandViewer 1.gbk
2252000*27711125112Island text2.2880325.430318.7468Neighbours11BLASTN+IslandViewer 252000.gbk
3429940*45259422655Island text4.206932.682638.6687Neighbours11BLASTN+429940.gbk
4766355*80285636502Island text1.7733319.525219.8563Neighbours11BLASTNIslandViewer 766355.gbk
5992401*102161529215Island text3.606429.993938.3234Neighbours11BLASTN+992401.gbk
61173603*119527321671Island text2.4012629.982429.4453Neighbours11BLASTN+IslandViewer 1173603.gbk
71202061122139519335Island text2.7914928.822121.477Neighbours11BLASTN+1202061.gbk
81318818134363724820Island text1.7115619.809631.5832Neighbours11BLASTN+IslandViewer 1318818.gbk
91558263158598127719Island text1.5118518.506820.8552Neighbours11BLASTN+IslandViewer 1558263.gbk
101588742161987131130Island text2.440128.62429.7879Neighbours11BLASTNIslandViewer 1588742.gbk
111623587167938555799Island text2.7944927.517823.6322Neighbours11BLASTN+IslandViewer 1623587.gbk
121705383172857623194Island text2.2664222.438721.5087Neighbours11BLASTN+1705383.gbk
131892546*191609923554Island text2.9337726.912724.7912Neighbours11BLASTN+1892546.gbk
142109500214093331434Island text1.8439919.002321.915Neighbours11BLASTN+IslandViewer 2109500.gbk
152405446243706531620Island text1.814125.044627.9774Neighbours11BLASTN+IslandViewer 2405446.gbk
162859000*292959970600Island text3.502135.170525.249Neighbours11BLASTN+IslandViewer 2859000.gbk
173091500311653225033Island text2.3541827.220917.6671Neighbours11BLASTN+IslandViewer 3091500.gbk
183457784350751049727Island text2.3119823.350319.5834Neighbours11BLASTN+IslandViewer 3457784.gbk
193607626362620918584Island text3.4253333.712336.7483Neighbours11BLASTN+IslandViewer 3607626.gbk
203789661381275923099Island text4.3407430.311435.852Neighbours11BLASTN+IslandViewer 3789661.gbk
214070968409296922002Island text3.0317331.09934.3848Neighbours11BLASTN4070968.gbk
224114469414649432026Island text1.8448618.911118.9183Neighbours11BLASTN+IslandViewer 4114469.gbk
234182194420306320870Island text1.3572323.200425.4355Neighbours11BLASTN4182194.gbk
244363005438440521401Island text1.6847523.03420.7874Neighbours11BLASTN+IslandViewer 4363005.gbk