Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015380: Candidatus Pelagibacter sp. IMCC9063 chromosome, complete genome

NCBI: NC_015380

Host Lineage: Pelagibacter; Pelagibacter; Pelagibacteraceae; Rickettsiales; Proteobacteria; Bacteria

General Information: Genomic DNA from Strain IMCC9063 from SAR11 group 3 isolated from an Arctic Envirionment/Ocean.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
199919*12464924731Island text1.5063118.82332.038Neighbours21BLASTN99919.gbk
219655421762621073Island text1.5682318.801131.2304Neighbours21BLASTN+196554.gbk
3303215*32339920185Island text1.5401815.634127.0252Neighbours21BLASTN303215.gbk
4412277*43518422908Island text1.5921916.551827.4724Neighbours21BLASTN+412277.gbk
571799074099123002Island text1.4473117.22424.8995Neighbours21BLASTN+717990.gbk
6859424*88083621413Island text1.8500815.336222.8591Neighbours21BLASTN859424.gbk
71066911*109186024950Island text1.7608218.861931.2101Neighbours21BLASTN1066911.gbk