Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015377: Burkholderia gladioli BSR3 plasmid bgla_2p, complete sequence

NCBI: NC_015377

Host Lineage: Burkholderia gladioli; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Together with Burkholderia glumae, B. gladioli is a causal agent in rice sheath rot and rice grain rot. The occurrence of B. gladioli has been wide-spread in many countries and considered as potential pathogens for great damage in rice production.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1344455962225178Island text1.4585626.355821.2937Neighbours11BLASTN34445.gbk
28684711271425868Island text1.6483223.015726.0472Neighbours11BLASTN86847.gbk