Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015376: Burkholderia gladioli BSR3 chromosome chromosome 2, complete

NCBI: NC_015376

Host Lineage: Burkholderia gladioli; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Together with Burkholderia glumae, B. gladioli is a causal agent in rice sheath rot and rice grain rot. The occurrence of B. gladioli has been wide-spread in many countries and considered as potential pathogens for great damage in rice production.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
134534736412518779Island text1.5174118.713519.1254Neighbours11BLASTN+345347.gbk
2662844*68656323720Island text1.4753220.865840.6383Neighbours11BLASTN+662844.gbk
390393993323129293Island text1.7016114.959313.4954Neighbours11BLASTN+IslandViewer 903939.gbk
496500098517820179Island text1.5364121.315717.8737Neighbours11BLASTN+IslandViewer 965000.gbk
51185000120456219563Island text1.5741614.832623.0235Neighbours11BLASTN1185000.gbk
61431728145164119914Island text1.4951820.051122.7251Neighbours11BLASTN1431728.gbk
71752883177658023698Island text1.7469819.386723.6448Neighbours11BLASTN+IslandViewer 1752883.gbk
82010009204069430686Island text2.4032423.760722.4891Neighbours11BLASTN+IslandViewer 2010009.gbk
92061990208910227113Island text1.8479818.575120.5768Neighbours11BLASTNIslandViewer 2061990.gbk
102241000226437323374Island text2.0949920.275417.1586Neighbours11BLASTN+IslandViewer 2241000.gbk
113249773327345123679Island text1.6918917.226215.659Neighbours11BLASTN+IslandViewer 3249773.gbk
123320818335828337466Island text1.6848317.366614.1316Neighbours11BLASTN+IslandViewer 3320818.gbk
133631392365107419683Island text1.4835919.5118.0655Neighbours11BLASTN+3631392.gbk