Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015321: Fluviicola taffensis DSM 16823 chromosome, complete genome

NCBI: NC_015321

Host Lineage: Fluviicola taffensis; Fluviicola; Cryomorphaceae; Flavobacteriales; Bacteroidetes; Bacteria

General Information: Environment: Fresh water, Hot spring; Isolation: Water of the River Taff, Cardiff, UK; Temp: Mesophile; Temp: 20C. This is a freshwater bacterium from the phylum Bacteroidetes isolated from water of the River Taff, Cardiff, UK.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1867143*89249025348Island text1.5736922.026134.5788Neighbours21BLASTN867143.gbk
21553590*157806724478Island text1.4634219.801830.3326Neighbours21BLASTN+IslandViewer 1553590.gbk
34142843416451121669Island text1.7460518.780426.5582Neighbours21BLASTN4142843.gbk
44287945431033322389Island text1.4906119.027728.3091Neighbours21BLASTN+IslandViewer 4287945.gbk
54495394451582120428Island text1.5986718.996827.6587Neighbours21BLASTN+4495394.gbk