Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015320: Archaeoglobus veneficus SNP6 chromosome, complete genome

NCBI: NC_015320

Host Lineage: Archaeoglobus veneficus; Archaeoglobus; Archaeoglobaceae; Archaeoglobales; Euryarchaeota; Archaea

General Information: Environment: Deep sea, Marine; Isolation: Black smoker wall, 3500m depth; Temp: Hyperthermophile; Temp: 75C; Country: Atlantic Ocean: Mid-Atlantic Ridge. This is a facultative chemolithoautotrophic hyperthermophilic sulfite reducer, isolated from abyssal black smokers.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1160792*17999819207Island text1.7222230.121244.439Neighbours36BLASTN160792.gbk
2211147*23471023564Island text1.6072530.055332.0136Neighbours36+211147.gbk
3273979*29615522177Island text1.5551533.286752.881Neighbours349BLASTN273979.gbk
4409949*43643426486Island text1.8111531.699944.4938Neighbours36BLASTN+IslandViewer 409949.gbk
547098850225531268Island text2.7392234.659720.8391Neighbours21BLASTN+IslandViewer 470988.gbk
6743983*76666422682Island text2.1197732.616427.5107Neighbours21BLASTN+743983.gbk
7790137*81899528859Island text2.1276639.959632.8904Neighbours349BLASTN+790137.gbk
8828972*84659917628Island text2.0237329.620650.3594BLASTN828972.gbk
9893686*91609922414Island text1.6367330.152647.052Neighbours36BLASTN893686.gbk
1096770198768419984Island text1.5497430.841145.3039Neighbours349BLASTN967701.gbk
111159613*119917839566Island text1.7426931.031141.399Neighbours36BLASTN+1159613.gbk
121260344128436224019Island text1.4893233.359738.9633Neighbours361260344.gbk
131342105138222040116Island text1.6728632.713238.4951Neighbours36BLASTN+1342105.gbk
141399589*142232722739Island text1.4202930.556949.0255Neighbours349BLASTN+1399589.gbk
151690047*171126221216Island text2.366831.957534.946Neighbours36BLASTNIslandViewer 1690047.gbk