Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015318: Hippea maritima DSM 10411 chromosome, complete genome

NCBI: NC_015318

Host Lineage: Hippea maritima; Hippea; Desulfurellaceae; Desulfurellales; Proteobacteria; Bacteria

General Information: Environment: Marine; Isolation: Marine sediment from hot vent of tidal zone; Temp: Thermophile; Tem: 55C; Country: Papua New Guinea: Matupi Harbour. This is a moderately thermophilic, sulfur-reducing bacterial species isolated from shallow-water hot vents of the Bay of Plenty (New Zealand) and Matupi Harbour (Papua New Guinea).



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
121948423851719034Island text1.73824.550149.6102Neighbours21BLASTN+219484.gbk
2249445*27619526751Island text2.4639736.539743.2039Neighbours21BLASTN249445.gbk
3290849*31051219664Island text1.6226126.669946.4673Neighbours21BLASTN290849.gbk
4426707*45058023874Island text1.6628926.336141.8576Neighbours21BLASTN+426707.gbk
5706374*72594619573Island text1.9137925.085144.7984Neighbours21BLASTN706374.gbk
6981989*101250730519Island text1.5627126.102644.9181Neighbours21BLASTN+981989.gbk
71151422*117846927048Island text1.6307328.831944.2567Neighbours21BLASTN1151422.gbk
81336282*137604139760Island text2.104927.240544.4639NeighboursBLASTN+1336282.gbk
91455444*147842622983Island text1.9739726.856245.299Neighbours21BLASTN1455444.gbk
101583839160659622758Island text1.5151129.644937.5563Neighbours21BLASTN+1583839.gbk