Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015315: Thermoproteus uzoniensis 768-20 chromosome, complete genome

NCBI: NC_015315

Host Lineage: Thermoproteus uzoniensis; Thermoproteus; Thermoproteaceae; Thermoproteales; Crenarchaeota; Archaea

General Information: Thermoproteus uzoniensis strain 768-20 is a thermoacidophilic anaerobic crenarchaeon isolated from a solfataric field in Kamchatka, Russia.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
112216722167Island text7.9905654.185227.7663Neighbours338BLASTN1.gbk
2416140*43967323534Island text1.599927.934535.4748Neighbours64BLASTN416140.gbk
379579982151125713Island text1.9643136.733129.7393Neighbours64BLASTN795799.gbk
41321000*134012819129Island text1.6569628.068323.6915Neighbours61BLASTN+1321000.gbk
51347982*136704219061Island text1.5134429.851716.5855Neighbours64BLASTN1347982.gbk
61458803*148747528673Island text1.8690634.749944.3483Neighbours61BLASTN+1458803.gbk
71584890*160678521896Island text1.5841727.399844.392Neighbours64BLASTN+1584890.gbk
81684925*171146926545Island text1.7166129.471525.0659Neighbours64BLASTN1684925.gbk
91717151*174032523175Island text1.5746728.146929.2301Neighbours64BLASTN+1717151.gbk