Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015311: Prevotella denticola F0289 chromosome, complete genome

NCBI: NC_015311

Host Lineage: Prevotella denticola; Prevotella; Prevotellaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: This is a genus of gram negative anaerobic bacteria.Some strains are present in humans, including Prevotella denticola. They are predominantly oral and can be opportunistic pathogens.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
124071*5174527675Island text3.2573943.9521.1802Neighbours34BLASTNIslandViewer 24071.gbk
214521517316227948Island text2.767345.382945.7019Neighbours37BLASTN+IslandViewer 145215.gbk
329428331483720555Island text2.0842339.290527.3931Neighbours336BLASTN+294283.gbk
4365007*38872623720Island text1.8750936.27838.4639Neighbours336BLASTN+365007.gbk
5403281*44809944819Island text3.2294648.016120.4628Neighbours21BLASTN+IslandViewer 403281.gbk
6510661*53501024350Island text1.9888339.259733.0661Neighbours336BLASTN+510661.gbk
772063174424323613Island text1.389137.360224.735Neighbours336BLASTN+720631.gbk
8813989*83779123803Island text2.1767142.015122.936Neighbours336BLASTNIslandViewer 813989.gbk
9896123*91509918977Island text1.7575437.071427.5795Neighbours336BLASTN+896123.gbk
101101761*112522323463Island text1.8537.679429.5164Neighbours336BLASTN+1101761.gbk
111157679*118106823390Island text1.5392637.299431.2523Neighbours3361157679.gbk
121612366*164599633631Island text4.8452848.000320.6701Neighbours21BLASTNIslandViewer 1612366.gbk
131827000185257925580Island text1.782340.972429.4166Neighbours336BLASTN+1827000.gbk
141860666190474744082Island text1.941141.292623.7579Neighbours312BLASTN+IslandViewer 1860666.gbk
152059879*211653856660Island text3.467146.468623.2165Neighbours21BLASTN+IslandViewer 2059879.gbk
162235550*225876723218Island text1.8409338.41830.3874Neighbours327BLASTN+2235550.gbk
172281711230486823158Island text2.1012137.217351.3704Neighbours327BLASTN+IslandViewer 2281711.gbk
182489176*250998520810Island text1.7389538.843638.2312Neighbours336BLASTN+2489176.gbk
192531616255564224027Island text1.7116837.448319.5517Neighbours336BLASTN2531616.gbk
202626850267310446255Island text2.9546845.029919.9222Neighbours21BLASTN+IslandViewer 2626850.gbk
212689118*271409924982Island text2.07343.89727.5053Neighbours336BLASTN2689118.gbk
222826000285454228543Island text2.7988742.442123.4823Neighbours336BLASTN+IslandViewer 2826000.gbk