Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_015278: Aerococcus urinae ACS-120-V-Col10a chromosome, complete genome

NCBI: NC_015278

Host Lineage: Aerococcus urinae; Aerococcus; Aerococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: Aerococcus urinae cells are Gram-positive, coccoid, occurring mostly inclusters but also in pairs and tetrads; non-pigmented andnon-motile; microaerophilic. This organism was isolated from human urinary tract specimens.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
117650819421717710Island text3.2599827.255634.5535Neighbours21BLASTN+IslandViewer 176508.gbk
233321935442021202Island text1.586433.977548.3285Neighbours26BLASTN+333219.gbk
353850056117922680Island text1.6544633.528648.1822Neighbours21BLASTN+IslandViewer 538500.gbk
4930047*95033520289Island text1.5594534.944750.2838Neighbours26930047.gbk
51960774*198031619543Island text1.5363236.694453.7215Neighbours26BLASTN+1960774.gbk