Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015277: Sphingobacterium sp. 21 chromosome, complete genome

NCBI: NC_015277

Host Lineage: Sphingobacterium; Sphingobacterium; Sphingobacteriaceae; Sphingobacteriales; Bacteroidetes; Bacteria

General Information: Temp: Mesophile.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
193571*11870825138Island text1.4848935.426824.601Neighbours21BLASTNIslandViewer 93571.gbk
2325207*34606120855Island text1.5621239.007825.0305Neighbours21BLASTN+IslandViewer 325207.gbk
3380624*40461123988Island text1.9409534.949542.5544Neighbours21BLASTN+380624.gbk
4689519*71236822850Island text2.3863735.741652.5969Neighbours21BLASTN689519.gbk
52096266*212009923834Island text1.5213329.310642.9894Neighbours21BLASTN+2096266.gbk
62283530*230662523096Island text1.4115831.645234.0419Neighbours39+2283530.gbk
72568781259091022130Island text1.5356141.044554.1905Neighbours3252568781.gbk
82702056272690024845Island text1.7320326.441344.265Neighbours21BLASTN+2702056.gbk
93351504*337700525502Island text2.3051538.898847.0074Neighbours21BLASTN3351504.gbk
104269399428796418566Island text1.5070426.763138.9268Neighbours325+IslandViewer 4269399.gbk
114358000438079722798Island text1.5000235.566642.4717Neighbours24BLASTN+4358000.gbk
125211779*523417522397Island text1.472233.256349.2752Neighbours215211779.gbk
136213304*624149928196Island text2.1071441.810141.3962Neighbours21BLASTN+6213304.gbk