Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015276: Marinomonas mediterranea MMB-1 chromosome, complete genome

NCBI: NC_015276

Host Lineage: Marinomonas mediterranea; Marinomonas; ; Oceanospirillales; Proteobacteria; Bacteria

General Information: Environment: Marine; Temp: Mesophile. Marinomonas mediterranea is a melanin-producing marine bacterium usually found in association with sea grass. This organism produces compounds which may have industrial uses.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
156570158820522505Island text1.6434829.733150.7979Neighbours42BLASTN+565701.gbk
263220665091918714Island text1.8201330.817547.3909Neighbours21BLASTNIslandViewer 632206.gbk
385515087818923040Island text1.4952132.16242.429Neighbours42BLASTN+855150.gbk
41037862106597128110Island text1.4964430.921743.5315Neighbours42BLASTN+1037862.gbk
51426000144883022831Island text1.7014231.049454.5925Neighbours21BLASTN+1426000.gbk
61531159155013418976Island text1.5383830.504238.1898Neighbours42BLASTN+1531159.gbk
71947936*196649518560Island text1.6708430.301652.8566Neighbours21BLASTN1947936.gbk
82023663204687823216Island text1.6235634.030348.5912Neighbours42BLASTN+IslandViewer 2023663.gbk
92171355*219270221348Island text1.588132.792751.9536Neighbours314BLASTN+2171355.gbk
102552484257288120398Island text1.8670630.940452.9827Neighbours42BLASTN2552484.gbk
112769000279436025361Island text1.5349631.311253.1365Neighbours21BLASTN+2769000.gbk
122804874*282337618503Island text1.6763129.854754.6961Neighbours314BLASTN2804874.gbk
132852010287194819939Island text1.6157330.447551.8212Neighbours42BLASTN+2852010.gbk
142948923297124422322Island text1.5859934.744747.0538Neighbours21BLASTN+2948923.gbk
153321277334009918823Island text1.542434.010250.4629BLASTN+IslandViewer 3321277.gbk
163669263369253323271Island text1.5501330.569132.6166Neighbours21BLASTN3669263.gbk
173829059384780618748Island text1.6971935.332653.1033BLASTN+3829059.gbk