Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015222: Nitrosomonas sp. AL212 chromosome, complete genome

NCBI: NC_015222

Host Lineage: Nitrosomonas; Nitrosomonas; Nitrosomonadaceae; Nitrosomonadales; Proteobacteria; Bacteria

General Information: Environment: Soil; Isolation: laboratory waste water treatment reactor; Temp: Mesophile.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
19484711662821782Island text2.1293427.661226.5116Neighbours21BLASTN+94847.gbk
2386000*40759921600Island text1.574626.783541.3348NeighboursBLASTN386000.gbk
352391554609922185Island text1.9895127.451430.2534Neighbours41BLASTN+523915.gbk
4983647100201818372Island text1.9710626.784423.5595Neighbours41BLASTN983647.gbk
51047944*107609928156Island text1.7930729.118449.5956Neighbours21BLASTN1047944.gbk
61127675*114732219648Island text1.7473626.963830.5782Neighbours21BLASTN1127675.gbk
71203465*122124217778Island text1.6535726.626320.1364Neighbours21BLASTN+1203465.gbk
81492500151210019601Island text1.6166127.656938.3664Neighbours41BLASTN1492500.gbk
91607757163302625270Island text2.1884529.109527.1623Neighbours41BLASTN+1607757.gbk
101749553*177272623174Island text1.5107927.723738.2933Neighbours41BLASTN+1749553.gbk
111843093186507521983Island text2.2704927.777716.0799Neighbours41BLASTN+IslandViewer 1843093.gbk
121905194*192907923886Island text1.6308327.74235.8874Neighbours41BLASTN+1905194.gbk
132089767*212261832852Island text1.8220628.118532.4779Neighbours21BLASTN2089767.gbk
142136657*216344226786Island text1.8149529.149135.9548Neighbours41BLASTN+2136657.gbk
152475792*249670020909Island text1.7345826.785433.2135Neighbours41BLASTN+2475792.gbk
162683056270709924044Island text2.0909628.94141.7665Neighbours21BLASTN+IslandViewer 2683056.gbk
173137167315861921453Island text1.5143830.899434.852Neighbours11BLASTN+IslandViewer 3137167.gbk