Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015216: Methanobacterium sp. AL-21 chromosome, complete genome

NCBI: NC_015216

Host Lineage: Methanobacterium lacus; Methanobacterium; Methanobacteriaceae; Methanobacteriales; Euryarchaeota; Archaea

General Information: Environment: Fresh water, Host; Temp: Mesophile.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
132859835398725390Island text1.8573227.869234.2482Neighbours21BLASTN+328598.gbk
240565742827422618Island text1.6695723.4633.9932Neighbours21BLASTN405657.gbk
3434752*45699322242Island text1.6552921.929729.6043Neighbours21BLASTN434752.gbk
4584841*60259917759Island text1.7029421.145433.4755Neighbours21BLASTN584841.gbk
565226667159919334Island text1.8889421.676434.3038Neighbours21BLASTN+652266.gbk
6742321*77236930049Island text2.5052827.791346.1512Neighbours21BLASTN+742321.gbk
780800083045922460Island text3.8523420.86577.61595Neighbours21BLASTN+IslandViewer 808000.gbk
81102837114211939283Island text2.6357721.1138.03781Neighbours21BLASTNIslandViewer 1102837.gbk
91278706132209943394Island text1.8912821.612238.2761Neighbours21BLASTN+1278706.gbk
101647462167155224091Island text1.7837523.710632.0527Neighbours211647462.gbk
111941000*196350322504Island text1.6966921.932840.6182Neighbours21BLASTN1941000.gbk
122070756*209218821433Island text1.5439924.023428.462Neighbours21BLASTN2070756.gbk
132113556213611022555Island text1.6450721.309636.2103Neighbours21BLASTN2113556.gbk
142213427*223382120395Island text1.9530221.504138.8074Neighbours21BLASTN2213427.gbk
152276929*229778220854Island text1.7619421.284435.1961Neighbours21BLASTN+2276929.gbk
162422758*245285630099Island text1.9925923.967739.5376Neighbours21BLASTN2422758.gbk
172548057256680218746Island text1.6537820.586135.1504Neighbours21BLASTN2548057.gbk