Pre_GI Island

Some Help

n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_015186: Acidiphilium multivorum AIU301, complete genome

NCBI: NC_015186

Host Lineage: Acidiphilium multivorum; Acidiphilium; Acetobacteraceae; Rhodospirillales; Proteobacteria; Bacteria

General Information: Thiosulfate oxidation. Acidophilic, aerobic, anoxygenic, phototrophic, Gram-negative bacterium isolated from pyritic acid mine drainage. A.multivorum has high ability of resistance to various metals under acidic condition, and require high acidity for growth. It exhibits tolerance towards some heavy metal ions like nickel, zinc, cadmium and copper, and resistance to arsenate and arsenite.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
136502*5988323382Island text1.7160322.154623.6744Neighbours11BLASTN+IslandViewer 36502.gbk
213256715282320257Island text1.6471218.196716.2017Neighbours11BLASTN+IslandViewer 132567.gbk
3347346*37448527140Island text1.809721.22725.3162Neighbours11BLASTN+IslandViewer 347346.gbk
4491930*52445732528Island text1.9289723.124818.2383Neighbours11BLASTN+IslandViewer 491930.gbk
553572755722721501Island text1.7896327.354924.3442Neighbours11BLASTN+IslandViewer 535727.gbk
6573289*59340920121Island text1.5703919.900320.8917Neighbours11BLASTNIslandViewer 573289.gbk
7597695*62009922405Island text1.4834118.725722.2073Neighbours11BLASTN+IslandViewer 597695.gbk
875500077410619107Island text1.8665520.297931.1716Neighbours11BLASTNIslandViewer 755000.gbk
91126830*116450437675Island text2.2487423.698623.1731Neighbours11BLASTN+IslandViewer 1126830.gbk
101504275*153079626522Island text1.610218.360918.7843Neighbours11BLASTN+IslandViewer 1504275.gbk
111698000*172212624127Island text1.7612919.119216.3296Neighbours11BLASTN+IslandViewer 1698000.gbk
122063960208778123822Island text1.7881122.741424.7256Neighbours11BLASTN+IslandViewer 2063960.gbk
132129046215448525440Island text2.017422.907914.1555Neighbours11BLASTN+IslandViewer 2129046.gbk
142165628218853522908Island text1.452920.80518.364Neighbours11BLASTN+IslandViewer 2165628.gbk
152197236*229649299257Island text1.8568621.047720.5031Neighbours11BLASTN+IslandViewer 2197236.gbk
162719645274300023356Island text1.852319.069913.8831Neighbours11BLASTN+IslandViewer 2719645.gbk
172839668286506725400Island text2.1733323.175714.7054Neighbours11BLASTN+IslandViewer 2839668.gbk
182884866290438219517Island text1.5505619.12921.9211Neighbours11BLASTN+IslandViewer 2884866.gbk
192908387292758619200Island text1.4609320.245613.8446Neighbours11BLASTN+IslandViewer 2908387.gbk
202931000*296035629357Island text3.475926.008829.459Neighbours11BLASTN+IslandViewer 2931000.gbk